Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Gm13392-201ENSMUST00000117708 150 ntBASIC17.75■□□□□ 0.43
Trim28Q62318 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Gm9728-201ENSMUST00000200197 1055 ntBASIC17.75■□□□□ 0.43
Trim28Q62318 Gm40466-201ENSMUST00000212174 422 ntBASIC17.75■□□□□ 0.43
Trim28Q62318 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim28Q62318 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
Trim28Q62318 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Trim28Q62318 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim28Q62318 Gm12500-202ENSMUST00000186471 2428 ntBASIC17.74■□□□□ 0.43
Trim28Q62318 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trim28Q62318 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Trim28Q62318 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim28Q62318 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim28Q62318 Dctn4-202ENSMUST00000223590 1530 ntBASIC17.74■□□□□ 0.43
Trim28Q62318 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim28Q62318 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC17.74■□□□□ 0.43
Trim28Q62318 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC17.74■□□□□ 0.43
Trim28Q62318 AC173210.1-201ENSMUST00000222341 1131 ntBASIC17.74■□□□□ 0.43
Trim28Q62318 Gm2824-203ENSMUST00000226189 1228 ntBASIC17.74■□□□□ 0.43
Trim28Q62318 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
Trim28Q62318 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim28Q62318 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim28Q62318 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Gm12742-201ENSMUST00000117326 410 ntBASIC17.73■□□□□ 0.43
Trim28Q62318 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim28Q62318 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC17.73■□□□□ 0.43
Trim28Q62318 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim28Q62318 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim28Q62318 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim28Q62318 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC17.73■□□□□ 0.43
Trim28Q62318 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Gm45684-201ENSMUST00000210244 1571 ntBASIC17.73■□□□□ 0.43
Trim28Q62318 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim28Q62318 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim28Q62318 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim28Q62318 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim28Q62318 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim28Q62318 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC17.72■□□□□ 0.43
Trim28Q62318 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim28Q62318 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Gm5187-201ENSMUST00000117317 991 ntBASIC17.72■□□□□ 0.43
Trim28Q62318 Gm11618-201ENSMUST00000117946 267 ntBASIC17.72■□□□□ 0.43
Trim28Q62318 Gm13123-201ENSMUST00000122173 492 ntBASIC17.72■□□□□ 0.43
Trim28Q62318 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim28Q62318 Gm8062-201ENSMUST00000139696 444 ntBASIC17.72■□□□□ 0.43
Trim28Q62318 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Trim28Q62318 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Gm37922-201ENSMUST00000195596 455 ntBASIC17.72■□□□□ 0.43
Trim28Q62318 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
Trim28Q62318 Gm44069-201ENSMUST00000204898 506 ntBASIC17.72■□□□□ 0.43
Trim28Q62318 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim28Q62318 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms