Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Gm38225-201ENSMUST00000194001 393 ntBASIC13.13□□□□□ -0.31
Nr1h4Q60641 Gm5712-201ENSMUST00000199748 1043 ntBASIC13.13□□□□□ -0.31
Nr1h4Q60641 Gm18057-201ENSMUST00000208220 503 ntBASIC13.13□□□□□ -0.31
Nr1h4Q60641 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 AC166341.4-201ENSMUST00000220625 123 ntBASIC13.13□□□□□ -0.31
Nr1h4Q60641 AC158529.1-201ENSMUST00000223618 239 ntBASIC13.13□□□□□ -0.31
Nr1h4Q60641 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Nr1h4Q60641 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 BC001981-202ENSMUST00000191393 1545 ntBASIC13.13□□□□□ -0.31
Nr1h4Q60641 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Nr1h4Q60641 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Gm17271-201ENSMUST00000165535 355 ntBASIC13.12□□□□□ -0.31
Nr1h4Q60641 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Gm3809-201ENSMUST00000180973 1006 ntBASIC13.12□□□□□ -0.31
Nr1h4Q60641 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.12□□□□□ -0.31
Nr1h4Q60641 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC13.12□□□□□ -0.31
Nr1h4Q60641 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Nr1h4Q60641 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Nr1h4Q60641 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms