Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Ankra2-208ENSMUST00000226100 1476 ntBASIC11.74□□□□□ -0.53
Col8a1Q00780 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm37912-201ENSMUST00000191895 3076 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm13034-201ENSMUST00000121342 3177 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm26464-201ENSMUST00000157094 305 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm37728-201ENSMUST00000195025 2292 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm38341-201ENSMUST00000195357 515 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC11.73□□□□□ -0.53
Col8a1Q00780 AC155637.1-201ENSMUST00000218560 636 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Cts7-204ENSMUST00000225321 1257 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 AC155237.1-201ENSMUST00000226196 1279 ntBASIC11.73□□□□□ -0.53
Col8a1Q00780 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC11.73□□□□□ -0.53
Col8a1Q00780 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Col8a1Q00780 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm21009-201ENSMUST00000197169 1669 ntBASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm10339-203ENSMUST00000225409 1671 ntBASIC11.72□□□□□ -0.53
Col8a1Q00780 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Col8a1Q00780 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm27331-201ENSMUST00000183705 60 ntBASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm43118-201ENSMUST00000199149 775 ntBASIC11.72□□□□□ -0.53
Col8a1Q00780 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC11.72□□□□□ -0.53
Col8a1Q00780 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms