Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC16.45■□□□□ 0.22
Rfx1P48377 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC16.45■□□□□ 0.22
Rfx1P48377 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.45■□□□□ 0.22
Rfx1P48377 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.45■□□□□ 0.22
Rfx1P48377 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.45■□□□□ 0.22
Rfx1P48377 Ighv8-14-201ENSMUST00000196781 358 ntBASIC16.45■□□□□ 0.22
Rfx1P48377 AC158529.1-201ENSMUST00000223618 239 ntBASIC16.45■□□□□ 0.22
Rfx1P48377 AC139350.3-201ENSMUST00000226151 420 ntBASIC16.45■□□□□ 0.22
Rfx1P48377 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.45■□□□□ 0.22
Rfx1P48377 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC16.45■□□□□ 0.22
Rfx1P48377 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Rfx1P48377 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Rfx1P48377 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Rfx1P48377 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
Rfx1P48377 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Rfx1P48377 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Rfx1P48377 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Rfx1P48377 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 AC154725.1-201ENSMUST00000224826 1961 ntBASIC16.44■□□□□ 0.22
Rfx1P48377 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 AC131586.3-201ENSMUST00000228355 1367 ntBASIC16.44■□□□□ 0.22
Rfx1P48377 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC16.44■□□□□ 0.22
Rfx1P48377 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Gm9727-201ENSMUST00000161387 555 ntBASIC16.44■□□□□ 0.22
Rfx1P48377 Gm5712-201ENSMUST00000199748 1043 ntBASIC16.44■□□□□ 0.22
Rfx1P48377 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC16.44■□□□□ 0.22
Rfx1P48377 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.44■□□□□ 0.22
Rfx1P48377 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC16.44■□□□□ 0.22
Rfx1P48377 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Rfx1P48377 Gm42934-201ENSMUST00000196920 1345 ntBASIC16.44■□□□□ 0.22
Rfx1P48377 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Rfx1P48377 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Rfx1P48377 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.43■□□□□ 0.22
Rfx1P48377 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC16.43■□□□□ 0.22
Rfx1P48377 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Rfx1P48377 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC16.43■□□□□ 0.22
Rfx1P48377 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Rfx1P48377 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Rfx1P48377 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Rfx1P48377 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Rfx1P48377 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Rfx1P48377 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Rfx1P48377 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Rfx1P48377 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Rfx1P48377 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms