Protein–RNA interactions for Protein: P40201

Chd1, Chromodomain-helicase-DNA-binding protein 1, mousemouse

Predictions only

Length 1,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd1P40201 AC139350.1-201ENSMUST00000227064 1594 ntBASIC20.22■□□□□ 0.83
Chd1P40201 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Chd1P40201 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chd1P40201 Gm7789-202ENSMUST00000211273 1400 ntBASIC20.22■□□□□ 0.83
Chd1P40201 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chd1P40201 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chd1P40201 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Chd1P40201 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Chd1P40201 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC20.21■□□□□ 0.83
Chd1P40201 Gm6506-201ENSMUST00000119775 1136 ntBASIC20.21■□□□□ 0.83
Chd1P40201 Gm5778-201ENSMUST00000171003 1072 ntBASIC20.21■□□□□ 0.83
Chd1P40201 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Chd1P40201 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC20.21■□□□□ 0.83
Chd1P40201 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 CT025551.1-201ENSMUST00000223996 692 ntBASIC20.21■□□□□ 0.83
Chd1P40201 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 AC159308.2-201ENSMUST00000213592 2325 ntBASIC20.21■□□□□ 0.83
Chd1P40201 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chd1P40201 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.83
Chd1P40201 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC20.2■□□□□ 0.82
Chd1P40201 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Chd1P40201 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC20.2■□□□□ 0.82
Chd1P40201 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC20.2■□□□□ 0.82
Chd1P40201 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Chd1P40201 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC20.2■□□□□ 0.82
Chd1P40201 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC20.2■□□□□ 0.82
Chd1P40201 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC20.2■□□□□ 0.82
Chd1P40201 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC20.2■□□□□ 0.82
Chd1P40201 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC20.2■□□□□ 0.82
Chd1P40201 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chd1P40201 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC20.19■□□□□ 0.82
Chd1P40201 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC20.19■□□□□ 0.82
Chd1P40201 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
Chd1P40201 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC20.19■□□□□ 0.82
Chd1P40201 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC20.19■□□□□ 0.82
Chd1P40201 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC20.19■□□□□ 0.82
Chd1P40201 Gm19287-201ENSMUST00000203190 358 ntBASIC20.19■□□□□ 0.82
Chd1P40201 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC20.19■□□□□ 0.82
Chd1P40201 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC20.19■□□□□ 0.82
Chd1P40201 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Gm9062-201ENSMUST00000117712 727 ntBASIC20.19■□□□□ 0.82
Chd1P40201 Gm13888-201ENSMUST00000119148 422 ntBASIC20.19■□□□□ 0.82
Chd1P40201 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC20.19■□□□□ 0.82
Chd1P40201 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC20.19■□□□□ 0.82
Chd1P40201 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC20.19■□□□□ 0.82
Chd1P40201 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chd1P40201 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC20.18■□□□□ 0.82
Chd1P40201 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Chd1P40201 Gm12029-201ENSMUST00000120073 832 ntBASIC20.18■□□□□ 0.82
Chd1P40201 Gm15432-201ENSMUST00000121106 195 ntBASIC20.18■□□□□ 0.82
Chd1P40201 Gm39404-201ENSMUST00000216350 313 ntBASIC20.18■□□□□ 0.82
Chd1P40201 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Chd1P40201 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Chd1P40201 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Chd1P40201 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms