Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Trim3Q9R1R2 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Matn2-206ENSMUST00000228570 2798 ntBASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gm8584-201ENSMUST00000171982 758 ntBASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gm16476-201ENSMUST00000221544 139 ntBASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gm5763-201ENSMUST00000155951 1530 ntBASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim3Q9R1R2 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Trim3Q9R1R2 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
Trim3Q9R1R2 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Gm44344-201ENSMUST00000200287 129 ntBASIC13□□□□□ -0.33
Trim3Q9R1R2 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC13□□□□□ -0.33
Trim3Q9R1R2 Dupd1-202ENSMUST00000224735 548 ntBASIC13□□□□□ -0.33
Trim3Q9R1R2 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Trim3Q9R1R2 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Trim3Q9R1R2 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trim3Q9R1R2 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim3Q9R1R2 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13□□□□□ -0.33
Trim3Q9R1R2 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Gm12428-201ENSMUST00000119844 727 ntBASIC12.99□□□□□ -0.33
Trim3Q9R1R2 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Gm27989-201ENSMUST00000184721 107 ntBASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim3Q9R1R2 Gm9063-201ENSMUST00000223299 582 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 109.8 ms