Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm7593-201ENSMUST00000187246 644 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm5641-202ENSMUST00000198699 1080 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm43818-201ENSMUST00000200605 466 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 Cts7-204ENSMUST00000225321 1257 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
Scn11aQ9R053 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC16.08■□□□□ 0.16
Scn11aQ9R053 Gm9431-201ENSMUST00000119765 1051 ntBASIC16.08■□□□□ 0.16
Scn11aQ9R053 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC16.08■□□□□ 0.16
Scn11aQ9R053 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Gm5850-201ENSMUST00000192923 1206 ntBASIC16.08■□□□□ 0.16
Scn11aQ9R053 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC16.08■□□□□ 0.16
Scn11aQ9R053 Olfr284-202ENSMUST00000206647 966 ntBASIC16.08■□□□□ 0.16
Scn11aQ9R053 Gm6334-201ENSMUST00000207083 228 ntBASIC16.08■□□□□ 0.16
Scn11aQ9R053 AC133598.1-201ENSMUST00000224327 660 ntBASIC16.08■□□□□ 0.16
Scn11aQ9R053 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Scn11aQ9R053 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC16.07■□□□□ 0.16
Scn11aQ9R053 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC16.07■□□□□ 0.16
Scn11aQ9R053 Gm11637-201ENSMUST00000120601 592 ntBASIC16.07■□□□□ 0.16
Scn11aQ9R053 Gm12363-201ENSMUST00000122250 668 ntBASIC16.07■□□□□ 0.16
Scn11aQ9R053 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC16.07■□□□□ 0.16
Scn11aQ9R053 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Scn11aQ9R053 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Gm8793-201ENSMUST00000183069 1303 ntBASIC16.06■□□□□ 0.16
Scn11aQ9R053 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC16.06■□□□□ 0.16
Scn11aQ9R053 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Gm17823-201ENSMUST00000217830 1006 ntBASIC16.06■□□□□ 0.16
Scn11aQ9R053 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Gm43289-201ENSMUST00000200537 1475 ntBASIC16.06■□□□□ 0.16
Scn11aQ9R053 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Scn11aQ9R053 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.05■□□□□ 0.16
Scn11aQ9R053 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC16.05■□□□□ 0.16
Scn11aQ9R053 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Gm25927-201ENSMUST00000175058 117 ntBASIC16.05■□□□□ 0.16
Scn11aQ9R053 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Gm45865-201ENSMUST00000211815 945 ntBASIC16.05■□□□□ 0.16
Scn11aQ9R053 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Snora73a-201ENSMUST00000082453 205 ntBASIC16.05■□□□□ 0.16
Scn11aQ9R053 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Scn11aQ9R053 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms