Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Gm11892-201ENSMUST00000117711 1202 ntBASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Gm12969-201ENSMUST00000120199 1004 ntBASIC18.32■□□□□ 0.52
Scn4aQ9ER60 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Scn4aQ9ER60 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Gm8584-201ENSMUST00000171982 758 ntBASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Scn4aQ9ER60 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Gm12628-201ENSMUST00000122193 382 ntBASIC18.3■□□□□ 0.52
Scn4aQ9ER60 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Gm23153-201ENSMUST00000175323 313 ntBASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Gm1821-202ENSMUST00000227415 750 ntBASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Gm21998-201ENSMUST00000117552 1308 ntBASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Gm7902-201ENSMUST00000198842 947 ntBASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 CT030637.1-201ENSMUST00000228016 669 ntBASIC18.3■□□□□ 0.52
Scn4aQ9ER60 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC18.3■□□□□ 0.52
Scn4aQ9ER60 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Gm11354-201ENSMUST00000121974 422 ntBASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 AC159205.5-202ENSMUST00000224849 386 ntBASIC18.29■□□□□ 0.52
Scn4aQ9ER60 CT009713.8-201ENSMUST00000225448 560 ntBASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Mir219a-1-201ENSMUST00000083621 110 ntBASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Scn4aQ9ER60 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Gm45598-202ENSMUST00000210719 986 ntBASIC18.28■□□□□ 0.52
Scn4aQ9ER60 AC107638.1-201ENSMUST00000213690 1061 ntBASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Gm10312-201ENSMUST00000078515 489 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms