Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Gm45059-201ENSMUST00000205558 1077 ntBASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Gm7653-201ENSMUST00000214567 508 ntBASIC16.54■□□□□ 0.24
Vps54Q5SPW0 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 AC131997.1-201ENSMUST00000228611 1229 ntBASIC16.54■□□□□ 0.24
Vps54Q5SPW0 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Vps54Q5SPW0 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm9115-201ENSMUST00000120192 1348 ntBASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm12485-201ENSMUST00000119641 291 ntBASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm45384-201ENSMUST00000210451 277 ntBASIC16.53■□□□□ 0.24
Vps54Q5SPW0 AC162801.1-201ENSMUST00000220612 198 ntBASIC16.53■□□□□ 0.24
Vps54Q5SPW0 AC140375.2-201ENSMUST00000225283 584 ntBASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Gm42872-201ENSMUST00000200026 1967 ntBASIC16.53■□□□□ 0.24
Vps54Q5SPW0 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Vps54Q5SPW0 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC16.52■□□□□ 0.24
Vps54Q5SPW0 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Gm18307-201ENSMUST00000206864 949 ntBASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Vps54Q5SPW0 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Vps54Q5SPW0 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Vps54Q5SPW0 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Vps54Q5SPW0 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms