Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Mir5131-201ENSMUST00000175426 93 ntBASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 AC084391.1-201ENSMUST00000200651 141 ntBASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.95□□□□□ -0.34
Trim40Q3UWA4 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Gm27194-201ENSMUST00000175753 2936 ntBASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim40Q3UWA4 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.94□□□□□ -0.34
Trim40Q3UWA4 AC123645.1-201ENSMUST00000228469 605 ntBASIC12.94□□□□□ -0.34
Trim40Q3UWA4 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Gm10819-201ENSMUST00000099988 561 ntBASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim40Q3UWA4 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 AC154725.1-201ENSMUST00000224826 1961 ntBASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Trim40Q3UWA4 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim40Q3UWA4 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Trim40Q3UWA4 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms