Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Hmgb1P63158 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Hmgb1P63158 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb1P63158 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb1P63158 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb1P63158 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb1P63158 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb1P63158 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Hmgb1P63158 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gm11594-201ENSMUST00000122313 162 ntBASIC15.2■□□□□ 0.02
Hmgb1P63158 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.2■□□□□ 0.02
Hmgb1P63158 AC154806.6-201ENSMUST00000228192 202 ntBASIC15.2■□□□□ 0.02
Hmgb1P63158 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.2■□□□□ 0.02
Hmgb1P63158 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.2■□□□□ 0.02
Hmgb1P63158 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb1P63158 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Gm14752-201ENSMUST00000120719 2075 ntBASIC15.2■□□□□ 0.02
Hmgb1P63158 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb1P63158 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb1P63158 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Hmgb1P63158 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.19■□□□□ 0.02
Hmgb1P63158 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Gm15653-201ENSMUST00000119247 907 ntBASIC15.19■□□□□ 0.02
Hmgb1P63158 Gm12428-201ENSMUST00000119844 727 ntBASIC15.19■□□□□ 0.02
Hmgb1P63158 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC15.19■□□□□ 0.02
Hmgb1P63158 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC15.19■□□□□ 0.02
Hmgb1P63158 Gm33320-201ENSMUST00000192232 530 ntBASIC15.19■□□□□ 0.02
Hmgb1P63158 Gm2213-201ENSMUST00000197485 688 ntBASIC15.19■□□□□ 0.02
Hmgb1P63158 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC15.19■□□□□ 0.02
Hmgb1P63158 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.19■□□□□ 0.02
Hmgb1P63158 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Hmgb1P63158 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC15.18■□□□□ 0.02
Hmgb1P63158 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb1P63158 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb1P63158 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb1P63158 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb1P63158 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb1P63158 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Hmgb1P63158 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Hmgb1P63158 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.18■□□□□ 0.02
Hmgb1P63158 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms