Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Rfx1P48377 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Rfx1P48377 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
Rfx1P48377 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Gm20632-201ENSMUST00000176760 2427 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Rfx1P48377 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Rfx1P48377 Gm29310-201ENSMUST00000185468 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21825-201ENSMUST00000185728 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm29109-201ENSMUST00000185895 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21896-201ENSMUST00000186520 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21873-201ENSMUST00000186728 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21794-201ENSMUST00000187056 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21880-201ENSMUST00000187275 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21826-201ENSMUST00000187451 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21198-201ENSMUST00000188393 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21749-201ENSMUST00000189343 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21901-201ENSMUST00000189568 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm29424-201ENSMUST00000189716 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm28599-201ENSMUST00000189838 694 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21867-201ENSMUST00000189917 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm29269-201ENSMUST00000190087 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21722-201ENSMUST00000190153 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm28423-201ENSMUST00000190701 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21899-201ENSMUST00000190745 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21910-201ENSMUST00000191163 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21849-201ENSMUST00000191571 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm28678-201ENSMUST00000191593 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm20910-201ENSMUST00000193268 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm21871-201ENSMUST00000194621 696 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Gm44608-201ENSMUST00000206827 855 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC16.47■□□□□ 0.23
Rfx1P48377 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.47■□□□□ 0.23
Rfx1P48377 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Rfx1P48377 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Rfx1P48377 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Rfx1P48377 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Rfx1P48377 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Rfx1P48377 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
Rfx1P48377 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Gm45242-201ENSMUST00000210666 2129 ntBASIC16.46■□□□□ 0.23
Rfx1P48377 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Zkscan14-203ENSMUST00000198959 2243 ntBASIC16.46■□□□□ 0.23
Rfx1P48377 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC16.46■□□□□ 0.23
Rfx1P48377 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC16.46■□□□□ 0.23
Rfx1P48377 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC16.46■□□□□ 0.23
Rfx1P48377 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
Rfx1P48377 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Rfx1P48377 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Rfx1P48377 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Rfx1P48377 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC16.46■□□□□ 0.23
Rfx1P48377 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Rfx1P48377 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
Rfx1P48377 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
Rfx1P48377 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Rfx1P48377 AC238940.1-201ENSMUST00000225106 1858 ntBASIC16.46■□□□□ 0.22
Rfx1P48377 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Rfx1P48377 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 49.8 ms