Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC13.16□□□□□ -0.3
Msx1P13297 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Msx1P13297 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Msx1P13297 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.16□□□□□ -0.3
Msx1P13297 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Msx1P13297 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Msx1P13297 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC13.15□□□□□ -0.3
Msx1P13297 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Msx1P13297 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC13.15□□□□□ -0.3
Msx1P13297 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC13.15□□□□□ -0.3
Msx1P13297 Ldha-ps-201ENSMUST00000119390 995 ntBASIC13.15□□□□□ -0.3
Msx1P13297 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC13.15□□□□□ -0.3
Msx1P13297 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 2410003L11Rik-202ENSMUST00000145262 642 ntTSL 3 BASIC13.15□□□□□ -0.3
Msx1P13297 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC13.15□□□□□ -0.3
Msx1P13297 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC13.15□□□□□ -0.3
Msx1P13297 Gm45484-201ENSMUST00000210310 1141 ntBASIC13.15□□□□□ -0.3
Msx1P13297 Gm18377-201ENSMUST00000215141 607 ntBASIC13.15□□□□□ -0.3
Msx1P13297 Gm17917-201ENSMUST00000218561 953 ntBASIC13.15□□□□□ -0.3
Msx1P13297 CT030657.3-201ENSMUST00000222707 1200 ntBASIC13.15□□□□□ -0.3
Msx1P13297 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC13.15□□□□□ -0.3
Msx1P13297 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Gm42535-201ENSMUST00000197312 1399 ntBASIC13.15□□□□□ -0.3
Msx1P13297 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Msx1P13297 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Msx1P13297 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
Msx1P13297 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Msx1P13297 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Msx1P13297 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Msx1P13297 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Msx1P13297 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC13.14□□□□□ -0.31
Msx1P13297 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Msx1P13297 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Msx1P13297 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Gm25509-201ENSMUST00000116985 106 ntBASIC13.14□□□□□ -0.31
Msx1P13297 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC13.14□□□□□ -0.31
Msx1P13297 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC13.14□□□□□ -0.31
Msx1P13297 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Msx1P13297 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Msx1P13297 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Gm5035-201ENSMUST00000215581 927 ntBASIC13.14□□□□□ -0.31
Msx1P13297 AC159006.1-201ENSMUST00000226396 258 ntBASIC13.14□□□□□ -0.31
Msx1P13297 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Msx1P13297 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Msx1P13297 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Msx1P13297 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms