Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
Lmx1bO88609 Gm30238-201ENSMUST00000195528 2603 ntBASIC12.53□□□□□ -0.4
Lmx1bO88609 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Lmx1bO88609 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC12.52□□□□□ -0.4
Lmx1bO88609 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC12.52□□□□□ -0.4
Lmx1bO88609 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC12.52□□□□□ -0.4
Lmx1bO88609 Ssr1-204ENSMUST00000225319 1610 ntBASIC12.52□□□□□ -0.4
Lmx1bO88609 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Lmx1bO88609 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Lmx1bO88609 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Lmx1bO88609 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Lmx1bO88609 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.52□□□□□ -0.41
Lmx1bO88609 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC12.52□□□□□ -0.41
Lmx1bO88609 AC155286.1-201ENSMUST00000218632 448 ntBASIC12.52□□□□□ -0.41
Lmx1bO88609 Gm18027-201ENSMUST00000218947 619 ntBASIC12.52□□□□□ -0.41
Lmx1bO88609 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.52□□□□□ -0.41
Lmx1bO88609 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Lmx1bO88609 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Lmx1bO88609 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.52□□□□□ -0.41
Lmx1bO88609 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Lmx1bO88609 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lmx1bO88609 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Lmx1bO88609 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Lmx1bO88609 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.51□□□□□ -0.41
Lmx1bO88609 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC12.51□□□□□ -0.41
Lmx1bO88609 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.51□□□□□ -0.41
Lmx1bO88609 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.51□□□□□ -0.41
Lmx1bO88609 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC12.51□□□□□ -0.41
Lmx1bO88609 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.51□□□□□ -0.41
Lmx1bO88609 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Lmx1bO88609 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Lmx1bO88609 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Lmx1bO88609 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lmx1bO88609 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Lmx1bO88609 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 AC166491.1-201ENSMUST00000227053 2308 ntBASIC12.5□□□□□ -0.41
Lmx1bO88609 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lmx1bO88609 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms