Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Matn2-206ENSMUST00000228570 2798 ntBASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Gm13223-201ENSMUST00000118609 747 ntBASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Gm6916-202ENSMUST00000205523 195 ntBASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 AC139350.3-201ENSMUST00000226151 420 ntBASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Gm5320-201ENSMUST00000207163 1519 ntBASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Gm27306-201ENSMUST00000183970 107 ntBASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Gm27321-201ENSMUST00000185021 205 ntBASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Gm38294-201ENSMUST00000192831 381 ntBASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Gm42872-201ENSMUST00000200026 1967 ntBASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Prpf40aQ9R1C7 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 AC126549.2-201ENSMUST00000223997 1976 ntBASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Gm3436-201ENSMUST00000179930 840 ntBASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Gm33320-201ENSMUST00000192232 530 ntBASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC15.22■□□□□ 0.03
Prpf40aQ9R1C7 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms