Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Scn11aQ9R053 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Gm6203-201ENSMUST00000209575 1342 ntBASIC16.11■□□□□ 0.17
Scn11aQ9R053 Gm27341-201ENSMUST00000183570 106 ntBASIC16.11■□□□□ 0.17
Scn11aQ9R053 Gm5363-201ENSMUST00000211927 938 ntBASIC16.11■□□□□ 0.17
Scn11aQ9R053 AC134254.1-201ENSMUST00000221362 167 ntBASIC16.11■□□□□ 0.17
Scn11aQ9R053 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.11■□□□□ 0.17
Scn11aQ9R053 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 AC113441.2-201ENSMUST00000221538 1468 ntBASIC16.11■□□□□ 0.17
Scn11aQ9R053 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Scn11aQ9R053 Snord83b-201ENSMUST00000104546 94 ntBASIC16.1■□□□□ 0.17
Scn11aQ9R053 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Gm12997-201ENSMUST00000120207 640 ntBASIC16.1■□□□□ 0.17
Scn11aQ9R053 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Gm44069-201ENSMUST00000204898 506 ntBASIC16.1■□□□□ 0.17
Scn11aQ9R053 Gm9445-201ENSMUST00000207454 1285 ntBASIC16.1■□□□□ 0.17
Scn11aQ9R053 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 n-R5s195-201ENSMUST00000082891 119 ntBASIC16.1■□□□□ 0.17
Scn11aQ9R053 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Sorbs3-204ENSMUST00000227929 2460 ntBASIC16.1■□□□□ 0.17
Scn11aQ9R053 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC16.1■□□□□ 0.17
Scn11aQ9R053 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC16.1■□□□□ 0.17
Scn11aQ9R053 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Scn11aQ9R053 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Scn11aQ9R053 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Gm38049-201ENSMUST00000195698 1372 ntBASIC16.09■□□□□ 0.17
Scn11aQ9R053 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Gm6023-201ENSMUST00000118217 606 ntBASIC16.09■□□□□ 0.17
Scn11aQ9R053 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Gm44207-201ENSMUST00000204568 1424 ntBASIC16.09■□□□□ 0.17
Scn11aQ9R053 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Scn11aQ9R053 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm22323-201ENSMUST00000103832 109 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm6161-201ENSMUST00000121942 1102 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm6254-201ENSMUST00000168178 1072 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm6153-201ENSMUST00000172004 1058 ntBASIC16.08■□□□□ 0.17
Scn11aQ9R053 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC16.08■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms