Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Gm12017-201ENSMUST00000122453 1003 ntBASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Ndufaf2-202ENSMUST00000223734 556 ntBASIC13.66□□□□□ -0.22
Lima1Q9ERG0 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lima1Q9ERG0 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gm10275-202ENSMUST00000168697 495 ntBASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gm18737-201ENSMUST00000173594 937 ntBASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC13.65□□□□□ -0.22
Lima1Q9ERG0 AC166341.4-201ENSMUST00000220625 123 ntBASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gm10275-201ENSMUST00000092620 635 ntBASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gm10729-202ENSMUST00000193403 1375 ntBASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lima1Q9ERG0 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.23
Lima1Q9ERG0 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Lima1Q9ERG0 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Gm27494-201ENSMUST00000184735 189 ntBASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lima1Q9ERG0 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms