Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Gm5425-201ENSMUST00000214125 459 ntBASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ddx56Q9D0R4 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Gm4204-201ENSMUST00000110798 1231 ntBASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Gm27306-201ENSMUST00000183970 107 ntBASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ddx56Q9D0R4 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Gm13385-201ENSMUST00000121089 220 ntBASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Gm44872-201ENSMUST00000207864 420 ntBASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ddx56Q9D0R4 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms