Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Gm6916-202ENSMUST00000205523 195 ntBASIC13.28□□□□□ -0.28
Lsm1Q8VC85 AC090659.2-201ENSMUST00000225378 1186 ntBASIC13.28□□□□□ -0.28
Lsm1Q8VC85 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Lsm1Q8VC85 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lsm1Q8VC85 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC13.27□□□□□ -0.28
Lsm1Q8VC85 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.27□□□□□ -0.28
Lsm1Q8VC85 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lsm1Q8VC85 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Lsm1Q8VC85 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Lsm1Q8VC85 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Lsm1Q8VC85 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Gm44719-201ENSMUST00000206404 149 ntBASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Lsm1Q8VC85 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Gm24158-201ENSMUST00000175263 71 ntBASIC13.26□□□□□ -0.29
Lsm1Q8VC85 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Gm43514-201ENSMUST00000198852 424 ntBASIC13.26□□□□□ -0.29
Lsm1Q8VC85 CT943659.1-201ENSMUST00000215459 326 ntBASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 AC121804.3-201ENSMUST00000223420 295 ntBASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Mir497b-201ENSMUST00000093601 125 ntBASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Lsm1Q8VC85 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms