Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Nup88Q8CEC0 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Nup88Q8CEC0 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
Nup88Q8CEC0 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Gm10275-202ENSMUST00000168697 495 ntBASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Gm10275-201ENSMUST00000092620 635 ntBASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Nup88Q8CEC0 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 AC238811.1-201ENSMUST00000225302 441 ntBASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Nup88Q8CEC0 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Gm4204-201ENSMUST00000110798 1231 ntBASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Gm29667-201ENSMUST00000190817 490 ntBASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Nup88Q8CEC0 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Gm18244-201ENSMUST00000219747 1566 ntBASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Gm38577-201ENSMUST00000221531 4545 ntBASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Mir1897-201ENSMUST00000122581 272 ntBASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Nup88Q8CEC0 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms