Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Trim27Q62158 Mir7023-201ENSMUST00000185093 64 ntBASIC16.97■□□□□ 0.31
Trim27Q62158 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC16.97■□□□□ 0.31
Trim27Q62158 AC154595.3-201ENSMUST00000224579 384 ntBASIC16.97■□□□□ 0.31
Trim27Q62158 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trim27Q62158 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Gm37691-201ENSMUST00000192147 2573 ntBASIC16.97■□□□□ 0.31
Trim27Q62158 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trim27Q62158 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Trim27Q62158 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Trim27Q62158 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim27Q62158 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 AC154262.2-201ENSMUST00000224310 2293 ntBASIC16.96■□□□□ 0.31
Trim27Q62158 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC16.96■□□□□ 0.31
Trim27Q62158 Krt26-201ENSMUST00000100482 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Trim27Q62158 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Trim27Q62158 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Acot6-202ENSMUST00000222921 3622 ntBASIC16.96■□□□□ 0.31
Trim27Q62158 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Trim27Q62158 Gm15321-201ENSMUST00000121290 288 ntBASIC16.96■□□□□ 0.31
Trim27Q62158 Mir8102-201ENSMUST00000184148 139 ntBASIC16.96■□□□□ 0.31
Trim27Q62158 Gm27838-201ENSMUST00000184829 128 ntBASIC16.96■□□□□ 0.31
Trim27Q62158 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Trim27Q62158 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC16.96■□□□□ 0.31
Trim27Q62158 AC131997.1-201ENSMUST00000228611 1229 ntBASIC16.96■□□□□ 0.31
Trim27Q62158 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Trim27Q62158 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Trim27Q62158 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Trim27Q62158 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim27Q62158 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim27Q62158 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim27Q62158 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim27Q62158 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim27Q62158 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
Trim27Q62158 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim27Q62158 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC16.95■□□□□ 0.3
Trim27Q62158 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Gm18905-201ENSMUST00000205454 928 ntBASIC16.95■□□□□ 0.3
Trim27Q62158 Gm20949-201ENSMUST00000206478 952 ntBASIC16.95■□□□□ 0.3
Trim27Q62158 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim27Q62158 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Trim27Q62158 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Trim27Q62158 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
Trim27Q62158 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC16.94■□□□□ 0.3
Trim27Q62158 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC16.94■□□□□ 0.3
Trim27Q62158 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim27Q62158 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms