Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm24514-201ENSMUST00000174961 285 ntBASIC15.15■□□□□ 0.02
Col11a1Q61245 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm27023-201ENSMUST00000182372 285 ntBASIC15.15■□□□□ 0.02
Col11a1Q61245 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC15.15■□□□□ 0.02
Col11a1Q61245 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm12539-201ENSMUST00000121549 1098 ntBASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC15.15■□□□□ 0.02
Col11a1Q61245 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Gm44262-201ENSMUST00000204969 372 ntBASIC15.15■□□□□ 0.02
Col11a1Q61245 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC15.15■□□□□ 0.02
Col11a1Q61245 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col11a1Q61245 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col11a1Q61245 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.02
Col11a1Q61245 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Col11a1Q61245 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col11a1Q61245 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col11a1Q61245 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC15.14■□□□□ 0.01
Col11a1Q61245 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Gm7899-201ENSMUST00000192935 1897 ntBASIC15.14■□□□□ 0.01
Col11a1Q61245 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Gm9083-201ENSMUST00000120423 819 ntBASIC15.14■□□□□ 0.01
Col11a1Q61245 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC15.14■□□□□ 0.01
Col11a1Q61245 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC15.14■□□□□ 0.01
Col11a1Q61245 Gm25700-201ENSMUST00000177693 110 ntBASIC15.14■□□□□ 0.01
Col11a1Q61245 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.14■□□□□ 0.01
Col11a1Q61245 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Col11a1Q61245 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col11a1Q61245 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC15.13■□□□□ 0.01
Col11a1Q61245 Gm4366-201ENSMUST00000201488 1342 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Col11a1Q61245 Gm11531-201ENSMUST00000117614 555 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 Gm8546-201ENSMUST00000178288 1264 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC15.13■□□□□ 0.01
Col11a1Q61245 Gm6458-201ENSMUST00000211573 635 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC15.13■□□□□ 0.01
Col11a1Q61245 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 AC101945.2-201ENSMUST00000227886 1377 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col11a1Q61245 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Col11a1Q61245 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Col11a1Q61245 Gstp-ps-201ENSMUST00000195526 631 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC15.13■□□□□ 0.01
Col11a1Q61245 AC153974.2-201ENSMUST00000218577 1025 ntBASIC15.13■□□□□ 0.01
Col11a1Q61245 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col11a1Q61245 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col11a1Q61245 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col11a1Q61245 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col11a1Q61245 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC15.12■□□□□ 0.01
Col11a1Q61245 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col11a1Q61245 Gm37827-201ENSMUST00000194486 1542 ntBASIC15.12■□□□□ 0.01
Col11a1Q61245 AC162938.1-201ENSMUST00000213140 2323 ntBASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms