Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Gm24513-201ENSMUST00000174964 138 ntBASIC15.24■□□□□ 0.03
Hmgb1P63158 Gm27397-201ENSMUST00000184997 107 ntBASIC15.24■□□□□ 0.03
Hmgb1P63158 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Hmgb1P63158 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Hmgb1P63158 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Hmgb1P63158 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Hmgb1P63158 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Hmgb1P63158 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Hmgb1P63158 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Hmgb1P63158 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Hmgb1P63158 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Hmgb1P63158 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Gm10253-201ENSMUST00000194270 940 ntBASIC15.23■□□□□ 0.03
Hmgb1P63158 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.23■□□□□ 0.03
Hmgb1P63158 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Hmgb1P63158 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.23■□□□□ 0.03
Hmgb1P63158 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Hmgb1P63158 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Hmgb1P63158 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb1P63158 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Gm24543-201ENSMUST00000103867 82 ntBASIC15.22■□□□□ 0.03
Hmgb1P63158 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Hmgb1P63158 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Gm2756-201ENSMUST00000195851 400 ntBASIC15.22■□□□□ 0.03
Hmgb1P63158 Gm6916-202ENSMUST00000205523 195 ntBASIC15.22■□□□□ 0.03
Hmgb1P63158 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.22■□□□□ 0.03
Hmgb1P63158 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb1P63158 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb1P63158 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Hmgb1P63158 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 AC159196.2-201ENSMUST00000224082 1622 ntBASIC15.21■□□□□ 0.03
Hmgb1P63158 Gm13517-201ENSMUST00000120782 1495 ntBASIC15.21■□□□□ 0.03
Hmgb1P63158 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC15.21■□□□□ 0.03
Hmgb1P63158 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Hmgb1P63158 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Hmgb1P63158 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb1P63158 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms