Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rfx1P48377 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC16.51■□□□□ 0.23
Rfx1P48377 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC16.51■□□□□ 0.23
Rfx1P48377 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC16.51■□□□□ 0.23
Rfx1P48377 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Rfx1P48377 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Rfx1P48377 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Rfx1P48377 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Rfx1P48377 Gm10729-202ENSMUST00000193403 1375 ntBASIC16.51■□□□□ 0.23
Rfx1P48377 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Rfx1P48377 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Rfx1P48377 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Rfx1P48377 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Gm15427-201ENSMUST00000117288 531 ntBASIC16.5■□□□□ 0.23
Rfx1P48377 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.5■□□□□ 0.23
Rfx1P48377 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.5■□□□□ 0.23
Rfx1P48377 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Gm2445-201ENSMUST00000182798 989 ntBASIC16.5■□□□□ 0.23
Rfx1P48377 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC16.5■□□□□ 0.23
Rfx1P48377 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC16.5■□□□□ 0.23
Rfx1P48377 Psmb5-202ENSMUST00000227257 622 ntBASIC16.5■□□□□ 0.23
Rfx1P48377 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Rfx1P48377 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Rfx1P48377 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Rfx1P48377 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Rfx1P48377 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Gm45638-201ENSMUST00000211507 2878 ntBASIC16.49■□□□□ 0.23
Rfx1P48377 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Rfx1P48377 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC16.49■□□□□ 0.23
Rfx1P48377 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Rfx1P48377 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 AC166341.4-201ENSMUST00000220625 123 ntBASIC16.49■□□□□ 0.23
Rfx1P48377 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.49■□□□□ 0.23
Rfx1P48377 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC16.49■□□□□ 0.23
Rfx1P48377 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC16.49■□□□□ 0.23
Rfx1P48377 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Rfx1P48377 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Rfx1P48377 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC16.48■□□□□ 0.23
Rfx1P48377 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.48■□□□□ 0.23
Rfx1P48377 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Rfx1P48377 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Rfx1P48377 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms