Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Prpf40aQ9R1C7 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Prpf40aQ9R1C7 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gm19087-201ENSMUST00000191430 946 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gm46209-201ENSMUST00000217912 553 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 AC159114.1-201ENSMUST00000220349 266 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gm9229-201ENSMUST00000222777 126 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 AC115735.4-201ENSMUST00000227460 1944 ntBASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Prpf40aQ9R1C7 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Prpf40aQ9R1C7 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms