Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC12.4□□□□□ -0.42
Trem1Q9JKE2 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trem1Q9JKE2 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Trem1Q9JKE2 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Trem1Q9JKE2 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
Trem1Q9JKE2 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.43
Trem1Q9JKE2 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC12.4□□□□□ -0.43
Trem1Q9JKE2 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Trem1Q9JKE2 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Trem1Q9JKE2 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 AC153506.1-201ENSMUST00000218768 2915 ntBASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gm6157-201ENSMUST00000199935 1897 ntBASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trem1Q9JKE2 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Gm23634-201ENSMUST00000175071 91 ntBASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Gm8655-201ENSMUST00000221159 852 ntBASIC12.38□□□□□ -0.43
Trem1Q9JKE2 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Gm29361-201ENSMUST00000183323 2000 ntBASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 AC157650.3-201ENSMUST00000225058 1476 ntBASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trem1Q9JKE2 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Trem1Q9JKE2 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms