Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm10710-201ENSMUST00000047876 3971 ntBASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Gm14452-201ENSMUST00000118680 1632 ntBASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Brf1Q8CFK2 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Syt7-204ENSMUST00000223586 1344 ntBASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Gm42872-201ENSMUST00000200026 1967 ntBASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Gm15321-201ENSMUST00000121290 288 ntBASIC16.71■□□□□ 0.27
Brf1Q8CFK2 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Il17rd-203ENSMUST00000225146 3366 ntBASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Gm12626-201ENSMUST00000117339 1983 ntBASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Gm12623-201ENSMUST00000119849 1983 ntBASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC16.71■□□□□ 0.27
Brf1Q8CFK2 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Brf1Q8CFK2 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Gm43399-201ENSMUST00000202546 2374 ntBASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Gm6912-201ENSMUST00000117218 544 ntBASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Gm15240-201ENSMUST00000118156 720 ntBASIC16.7■□□□□ 0.26
Brf1Q8CFK2 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Gm24694-201ENSMUST00000180054 110 ntBASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Gm27663-201ENSMUST00000184839 110 ntBASIC16.7■□□□□ 0.26
Brf1Q8CFK2 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Brf1Q8CFK2 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC16.7■□□□□ 0.26
Brf1Q8CFK2 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms