Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ccdc28bQ8CEG5 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ccdc28bQ8CEG5 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Gm44891-201ENSMUST00000208817 2223 ntBASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Ccdc28bQ8CEG5 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Gm28386-201ENSMUST00000189147 1849 ntBASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Gm5177-201ENSMUST00000183092 997 ntBASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Ccdc28bQ8CEG5 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Klk2-ps-201ENSMUST00000205342 571 ntBASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Gm15590-201ENSMUST00000078419 552 ntBASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ccdc28bQ8CEG5 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Ccdc28bQ8CEG5 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms