Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Gm6745-201ENSMUST00000199216 526 ntBASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Gm46209-201ENSMUST00000217912 553 ntBASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Gm42471-201ENSMUST00000201457 1865 ntBASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Gm15163-201ENSMUST00000120749 1302 ntBASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
Vps53Q8CCB4 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm38102-201ENSMUST00000192791 1935 ntBASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm4875-201ENSMUST00000118257 786 ntBASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 AC130829.1-201ENSMUST00000221548 494 ntBASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm5763-201ENSMUST00000155951 1530 ntBASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Gm26513-201ENSMUST00000181802 2489 ntBASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Vps53Q8CCB4 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Gm23984-201ENSMUST00000157139 203 ntBASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Gm3436-201ENSMUST00000179930 840 ntBASIC16.11■□□□□ 0.17
Vps53Q8CCB4 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Cdk7-205ENSMUST00000225990 1159 ntBASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Gm15222-202ENSMUST00000228667 1726 ntBASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Vps53Q8CCB4 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms