Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Gm13616-201ENSMUST00000120600 222 ntBASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Gm3436-201ENSMUST00000179930 840 ntBASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trim58Q5NCC9 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm12585-201ENSMUST00000117307 290 ntBASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm13223-201ENSMUST00000118609 747 ntBASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm13385-201ENSMUST00000121089 220 ntBASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Cd63-ps-201ENSMUST00000145417 875 ntBASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm4804-201ENSMUST00000182234 999 ntBASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Trim58Q5NCC9 AC154262.2-201ENSMUST00000224310 2293 ntBASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trim58Q5NCC9 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trim58Q5NCC9 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Gm13453-201ENSMUST00000118708 357 ntBASIC17.51■□□□□ 0.39
Trim58Q5NCC9 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Gm17837-201ENSMUST00000186435 985 ntBASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Acot6-202ENSMUST00000222921 3622 ntBASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trim58Q5NCC9 AC168058.1-201ENSMUST00000219521 2282 ntBASIC17.51■□□□□ 0.39
Trim58Q5NCC9 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms