Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gm12626-201ENSMUST00000117339 1983 ntBASIC16.32■□□□□ 0.2
Limch1Q3UH68 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gm12623-201ENSMUST00000119849 1983 ntBASIC16.32■□□□□ 0.2
Limch1Q3UH68 Mir1897-201ENSMUST00000122581 272 ntBASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gm29667-201ENSMUST00000190817 490 ntBASIC16.32■□□□□ 0.2
Limch1Q3UH68 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Gm42872-201ENSMUST00000200026 1967 ntBASIC16.31■□□□□ 0.2
Limch1Q3UH68 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC16.31■□□□□ 0.2
Limch1Q3UH68 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Limch1Q3UH68 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Gm12859-201ENSMUST00000117834 427 ntBASIC16.3■□□□□ 0.2
Limch1Q3UH68 Gm15653-201ENSMUST00000119247 907 ntBASIC16.3■□□□□ 0.2
Limch1Q3UH68 Gm12490-201ENSMUST00000120255 560 ntBASIC16.3■□□□□ 0.2
Limch1Q3UH68 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Cd63-ps-201ENSMUST00000145417 875 ntBASIC16.3■□□□□ 0.2
Limch1Q3UH68 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Gm6218-201ENSMUST00000219812 628 ntBASIC16.3■□□□□ 0.2
Limch1Q3UH68 CT030704.2-201ENSMUST00000228887 494 ntBASIC16.3■□□□□ 0.2
Limch1Q3UH68 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Limch1Q3UH68 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC16.29■□□□□ 0.2
Limch1Q3UH68 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Gm6263-201ENSMUST00000120029 1342 ntBASIC16.29■□□□□ 0.2
Limch1Q3UH68 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 AL593843.1-201ENSMUST00000195891 145 ntBASIC16.29■□□□□ 0.2
Limch1Q3UH68 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Gm16476-201ENSMUST00000221544 139 ntBASIC16.29■□□□□ 0.2
Limch1Q3UH68 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Gm5639-201ENSMUST00000122305 2403 ntBASIC16.29■□□□□ 0.2
Limch1Q3UH68 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 83.5 ms