Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Col17a1Q07563 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Col17a1Q07563 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC20.79■□□□□ 0.92
Col17a1Q07563 AC166095.1-201ENSMUST00000223731 1241 ntBASIC20.79■□□□□ 0.92
Col17a1Q07563 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC20.79■□□□□ 0.92
Col17a1Q07563 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC20.79■□□□□ 0.92
Col17a1Q07563 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Col17a1Q07563 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Gm14058-201ENSMUST00000116082 735 ntBASIC20.78■□□□□ 0.92
Col17a1Q07563 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Gm4862-201ENSMUST00000170405 438 ntBASIC20.78■□□□□ 0.92
Col17a1Q07563 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC20.78■□□□□ 0.92
Col17a1Q07563 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Col17a1Q07563 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Col17a1Q07563 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Col17a1Q07563 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Gm4864-201ENSMUST00000219894 1461 ntBASIC20.77■□□□□ 0.92
Col17a1Q07563 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC20.77■□□□□ 0.92
Col17a1Q07563 Gm6039-201ENSMUST00000121667 1250 ntBASIC20.77■□□□□ 0.92
Col17a1Q07563 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC20.77■□□□□ 0.92
Col17a1Q07563 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Gm25604-201ENSMUST00000158359 133 ntBASIC20.77■□□□□ 0.92
Col17a1Q07563 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC20.77■□□□□ 0.92
Col17a1Q07563 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC20.77■□□□□ 0.92
Col17a1Q07563 Gm30437-201ENSMUST00000206086 1201 ntBASIC20.77■□□□□ 0.92
Col17a1Q07563 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC20.77■□□□□ 0.92
Col17a1Q07563 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col17a1Q07563 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC20.76■□□□□ 0.91
Col17a1Q07563 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC20.76■□□□□ 0.91
Col17a1Q07563 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC20.76■□□□□ 0.91
Col17a1Q07563 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Gm25201-201ENSMUST00000083093 170 ntBASIC20.76■□□□□ 0.91
Col17a1Q07563 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
Col17a1Q07563 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC20.76■□□□□ 0.91
Col17a1Q07563 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Col17a1Q07563 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col17a1Q07563 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Gm18974-201ENSMUST00000221478 1031 ntBASIC20.75■□□□□ 0.91
Col17a1Q07563 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms