Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC16.54■□□□□ 0.24
Rfx1P48377 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Rfx1P48377 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Rfx1P48377 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC16.54■□□□□ 0.24
Rfx1P48377 CT030704.2-201ENSMUST00000228887 494 ntBASIC16.54■□□□□ 0.24
Rfx1P48377 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC16.54■□□□□ 0.24
Rfx1P48377 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rfx1P48377 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC16.53■□□□□ 0.24
Rfx1P48377 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Rfx1P48377 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Rfx1P48377 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC16.53■□□□□ 0.24
Rfx1P48377 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC16.53■□□□□ 0.24
Rfx1P48377 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Rfx1P48377 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC16.53■□□□□ 0.24
Rfx1P48377 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC16.53■□□□□ 0.24
Rfx1P48377 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC16.53■□□□□ 0.24
Rfx1P48377 Ighv8-7-201ENSMUST00000194349 297 ntBASIC16.53■□□□□ 0.24
Rfx1P48377 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.53■□□□□ 0.24
Rfx1P48377 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC16.53■□□□□ 0.24
Rfx1P48377 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC16.53■□□□□ 0.24
Rfx1P48377 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Rfx1P48377 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rfx1P48377 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Rfx1P48377 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Rfx1P48377 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC16.52■□□□□ 0.24
Rfx1P48377 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC16.52■□□□□ 0.24
Rfx1P48377 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC16.52■□□□□ 0.24
Rfx1P48377 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Rfx1P48377 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC16.52■□□□□ 0.24
Rfx1P48377 Gm15957-201ENSMUST00000118893 974 ntBASIC16.52■□□□□ 0.24
Rfx1P48377 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Rfx1P48377 Gm11543-201ENSMUST00000120758 370 ntBASIC16.52■□□□□ 0.24
Rfx1P48377 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.52■□□□□ 0.24
Rfx1P48377 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC16.52■□□□□ 0.24
Rfx1P48377 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC16.52■□□□□ 0.24
Rfx1P48377 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC16.52■□□□□ 0.24
Rfx1P48377 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Rfx1P48377 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Rfx1P48377 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rfx1P48377 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rfx1P48377 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Rfx1P48377 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rfx1P48377 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC16.52■□□□□ 0.23
Rfx1P48377 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Rfx1P48377 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms