Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Col18a1P39061 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC17.93■□□□□ 0.46
Col18a1P39061 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC17.93■□□□□ 0.46
Col18a1P39061 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC17.93■□□□□ 0.46
Col18a1P39061 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC17.93■□□□□ 0.46
Col18a1P39061 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 AC139350.1-201ENSMUST00000227064 1594 ntBASIC17.93■□□□□ 0.46
Col18a1P39061 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC17.93■□□□□ 0.46
Col18a1P39061 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col18a1P39061 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Col18a1P39061 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col18a1P39061 Gm38157-201ENSMUST00000194178 1698 ntBASIC17.92■□□□□ 0.46
Col18a1P39061 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC17.92■□□□□ 0.46
Col18a1P39061 Gm43205-201ENSMUST00000198622 1968 ntBASIC17.92■□□□□ 0.46
Col18a1P39061 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col18a1P39061 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC17.92■□□□□ 0.46
Col18a1P39061 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC17.92■□□□□ 0.46
Col18a1P39061 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC17.92■□□□□ 0.46
Col18a1P39061 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col18a1P39061 Nupl1-207ENSMUST00000225311 2475 ntBASIC17.92■□□□□ 0.46
Col18a1P39061 Gm4864-201ENSMUST00000219894 1461 ntBASIC17.92■□□□□ 0.46
Col18a1P39061 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col18a1P39061 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.92■□□□□ 0.46
Col18a1P39061 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Col18a1P39061 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col18a1P39061 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col18a1P39061 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Col18a1P39061 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col18a1P39061 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Mir6958-201ENSMUST00000184207 73 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 Rprl1-202ENSMUST00000198476 238 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC17.91■□□□□ 0.46
Col18a1P39061 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Gm45495-201ENSMUST00000200940 1700 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Gm16011-201ENSMUST00000121567 2662 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col18a1P39061 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Col18a1P39061 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Gm13611-201ENSMUST00000118269 318 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC17.91■□□□□ 0.46
Col18a1P39061 Gm45433-201ENSMUST00000209386 247 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
Col18a1P39061 AC113031.8-201ENSMUST00000227856 631 ntBASIC17.91■□□□□ 0.46
Col18a1P39061 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC17.91■□□□□ 0.46
Col18a1P39061 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col18a1P39061 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Col18a1P39061 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Col18a1P39061 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC17.9■□□□□ 0.46
Col18a1P39061 Gm12380-201ENSMUST00000119012 544 ntBASIC17.9■□□□□ 0.46
Col18a1P39061 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Col18a1P39061 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Col18a1P39061 AC122876.1-201ENSMUST00000217619 825 ntBASIC17.9■□□□□ 0.46
Col18a1P39061 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Gm22058-201ENSMUST00000083393 310 ntBASIC17.9■□□□□ 0.46
Col18a1P39061 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC17.9■□□□□ 0.46
Col18a1P39061 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Col18a1P39061 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col18a1P39061 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
Col18a1P39061 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Col18a1P39061 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Col18a1P39061 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
Col18a1P39061 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Gm15131-201ENSMUST00000119124 595 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Gm13736-201ENSMUST00000119272 253 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Gm13492-201ENSMUST00000119772 665 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Gm10051-201ENSMUST00000145209 414 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC17.89■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 86.1 ms