Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm38102-201ENSMUST00000192791 1935 ntBASIC16.01■□□□□ 0.15
Col1a1P11087 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16.01■□□□□ 0.15
Col1a1P11087 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC16.01■□□□□ 0.15
Col1a1P11087 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Gm7809-201ENSMUST00000153199 742 ntBASIC16.01■□□□□ 0.15
Col1a1P11087 Gm25668-201ENSMUST00000157700 129 ntBASIC16.01■□□□□ 0.15
Col1a1P11087 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC16.01■□□□□ 0.15
Col1a1P11087 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC16.01■□□□□ 0.15
Col1a1P11087 Gm6082-201ENSMUST00000215204 454 ntBASIC16.01■□□□□ 0.15
Col1a1P11087 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Col1a1P11087 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col1a1P11087 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Col1a1P11087 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Gm8793-201ENSMUST00000183069 1303 ntBASIC16■□□□□ 0.15
Col1a1P11087 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC16■□□□□ 0.15
Col1a1P11087 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
Col1a1P11087 Gm8337-201ENSMUST00000187358 1938 ntBASIC16■□□□□ 0.15
Col1a1P11087 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
Col1a1P11087 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Col1a1P11087 Gm11964-201ENSMUST00000120982 444 ntBASIC16■□□□□ 0.15
Col1a1P11087 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC16■□□□□ 0.15
Col1a1P11087 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Col1a1P11087 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col1a1P11087 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Gm16202-201ENSMUST00000117532 544 ntBASIC15.99■□□□□ 0.15
Col1a1P11087 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC15.99■□□□□ 0.15
Col1a1P11087 Mir5132-201ENSMUST00000175166 71 ntBASIC15.99■□□□□ 0.15
Col1a1P11087 Mospd4-201ENSMUST00000180618 576 ntBASIC15.99■□□□□ 0.15
Col1a1P11087 Gm5363-201ENSMUST00000211927 938 ntBASIC15.99■□□□□ 0.15
Col1a1P11087 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC15.99■□□□□ 0.15
Col1a1P11087 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Col1a1P11087 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Col1a1P11087 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC15.99■□□□□ 0.15
Col1a1P11087 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC15.99■□□□□ 0.15
Col1a1P11087 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Col1a1P11087 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Col1a1P11087 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms