Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm12033-201ENSMUST00000180654 1002 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm5559-201ENSMUST00000180755 1002 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm4335-201ENSMUST00000182581 1004 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Chd3B1AR17 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm43056-201ENSMUST00000197865 2791 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm12390-201ENSMUST00000117897 397 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm11803-201ENSMUST00000119966 444 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Chd3B1AR17 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC13.54□□□□□ -0.24
Chd3B1AR17 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
Chd3B1AR17 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Chd3B1AR17 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Chd3B1AR17 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
Chd3B1AR17 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Gm9115-201ENSMUST00000120192 1348 ntBASIC13.53□□□□□ -0.24
Chd3B1AR17 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.53□□□□□ -0.24
Chd3B1AR17 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Chd3B1AR17 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 Gm24196-201ENSMUST00000179161 110 ntBASIC13.52□□□□□ -0.24
Chd3B1AR17 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC13.52□□□□□ -0.24
Chd3B1AR17 AC166349.1-201ENSMUST00000220866 695 ntBASIC13.52□□□□□ -0.24
Chd3B1AR17 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
Chd3B1AR17 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
Chd3B1AR17 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
Chd3B1AR17 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Chd3B1AR17 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
Chd3B1AR17 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.25
Chd3B1AR17 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 Gm28182-201ENSMUST00000188354 2477 ntBASIC13.52□□□□□ -0.25
Chd3B1AR17 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
Chd3B1AR17 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC13.52□□□□□ -0.25
Chd3B1AR17 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC13.52□□□□□ -0.25
Chd3B1AR17 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC13.52□□□□□ -0.25
Chd3B1AR17 Ighv5-13-201ENSMUST00000193550 290 ntBASIC13.52□□□□□ -0.25
Chd3B1AR17 Gm44799-201ENSMUST00000207639 1202 ntBASIC13.52□□□□□ -0.25
Chd3B1AR17 Gm5035-201ENSMUST00000215581 927 ntBASIC13.52□□□□□ -0.25
Chd3B1AR17 Gm8598-201ENSMUST00000221184 836 ntBASIC13.52□□□□□ -0.25
Chd3B1AR17 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Chd3B1AR17 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms