Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 AC159621.2-201ENSMUST00000223519 1326 ntBASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Shd-206ENSMUST00000225145 998 ntBASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 AC156016.3-201ENSMUST00000228623 344 ntBASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Gm27680-201ENSMUST00000184192 160 ntBASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Gm6888-201ENSMUST00000221983 706 ntBASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Acot6-202ENSMUST00000222921 3622 ntBASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Prpf40aQ9R1C7 Gm42769-201ENSMUST00000198576 1659 ntBASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 CT030684.3-201ENSMUST00000227308 2445 ntBASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Gm12428-201ENSMUST00000119844 727 ntBASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Mir1897-201ENSMUST00000122581 272 ntBASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Gm17837-201ENSMUST00000186435 985 ntBASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Gm44344-201ENSMUST00000200287 129 ntBASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Prpf40aQ9R1C7 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 AC121801.1-201ENSMUST00000225363 1899 ntBASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Gm37691-201ENSMUST00000192147 2573 ntBASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Prpf40aQ9R1C7 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms