Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Gm27501-201ENSMUST00000183599 107 ntBASIC16.18■□□□□ 0.18
Scn11aQ9R053 Gm28693-202ENSMUST00000190758 331 ntBASIC16.18■□□□□ 0.18
Scn11aQ9R053 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC16.18■□□□□ 0.18
Scn11aQ9R053 CT573034.1-201ENSMUST00000222983 313 ntBASIC16.18■□□□□ 0.18
Scn11aQ9R053 Gm16372-201ENSMUST00000073088 450 ntBASIC16.18■□□□□ 0.18
Scn11aQ9R053 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Gm13369-201ENSMUST00000119442 987 ntBASIC16.18■□□□□ 0.18
Scn11aQ9R053 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scn11aQ9R053 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC16.18■□□□□ 0.18
Scn11aQ9R053 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC16.17■□□□□ 0.18
Scn11aQ9R053 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Gm13342-201ENSMUST00000121055 207 ntBASIC16.17■□□□□ 0.18
Scn11aQ9R053 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Rps4l-202ENSMUST00000204242 789 ntBASIC16.17■□□□□ 0.18
Scn11aQ9R053 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Scn11aQ9R053 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Gm12749-201ENSMUST00000122138 1159 ntBASIC16.16■□□□□ 0.18
Scn11aQ9R053 Gm2639-201ENSMUST00000156881 1297 ntBASIC16.16■□□□□ 0.18
Scn11aQ9R053 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Gm5896-201ENSMUST00000189662 1024 ntBASIC16.16■□□□□ 0.18
Scn11aQ9R053 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC16.16■□□□□ 0.18
Scn11aQ9R053 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Scn11aQ9R053 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gm1335-201ENSMUST00000121653 386 ntBASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Gm45880-201ENSMUST00000213041 853 ntBASIC16.15■□□□□ 0.18
Scn11aQ9R053 Nsd1-205ENSMUST00000224693 852 ntBASIC16.15■□□□□ 0.18
Scn11aQ9R053 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Scn11aQ9R053 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Scn11aQ9R053 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms