Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Gm43094-201ENSMUST00000196549 921 ntBASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Gm45668-201ENSMUST00000211271 493 ntBASIC16.64■□□□□ 0.25
Vps54Q5SPW0 AC238811.3-201ENSMUST00000225422 709 ntBASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Gm6180-201ENSMUST00000065243 498 ntBASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Gm37015-201ENSMUST00000192763 1521 ntBASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps54Q5SPW0 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Gm12341-201ENSMUST00000119724 503 ntBASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Gm15376-201ENSMUST00000122258 783 ntBASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps54Q5SPW0 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Mir6392-201ENSMUST00000184924 108 ntBASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Gm19220-201ENSMUST00000222682 803 ntBASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Gm15823-201ENSMUST00000064305 670 ntBASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Gm13859-201ENSMUST00000119936 1423 ntBASIC16.62■□□□□ 0.25
Vps54Q5SPW0 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Vps54Q5SPW0 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms