Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Gm4204-201ENSMUST00000110798 1231 ntBASIC16.35■□□□□ 0.21
Limch1Q3UH68 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Gm7653-201ENSMUST00000214567 508 ntBASIC16.35■□□□□ 0.21
Limch1Q3UH68 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Mir125a-201ENSMUST00000083545 68 ntBASIC16.35■□□□□ 0.21
Limch1Q3UH68 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Limch1Q3UH68 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC16.34■□□□□ 0.21
Limch1Q3UH68 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Limch1Q3UH68 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Limch1Q3UH68 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Limch1Q3UH68 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Limch1Q3UH68 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Limch1Q3UH68 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Gm6473-201ENSMUST00000188572 1210 ntBASIC16.33■□□□□ 0.2
Limch1Q3UH68 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Gm9794-201ENSMUST00000202370 423 ntBASIC16.33■□□□□ 0.2
Limch1Q3UH68 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC16.33■□□□□ 0.2
Limch1Q3UH68 AC238811.1-201ENSMUST00000225302 441 ntBASIC16.33■□□□□ 0.2
Limch1Q3UH68 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Limch1Q3UH68 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Limch1Q3UH68 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms