Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm4804-201ENSMUST00000182234 999 ntBASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm27501-201ENSMUST00000183599 107 ntBASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Mettl6-204ENSMUST00000227595 1027 ntBASIC11.83□□□□□ -0.52
Col8a1Q00780 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col8a1Q00780 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Col8a1Q00780 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC11.82□□□□□ -0.52
Col8a1Q00780 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC11.82□□□□□ -0.52
Col8a1Q00780 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm12416-201ENSMUST00000120911 1008 ntBASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm15376-201ENSMUST00000122258 783 ntBASIC11.82□□□□□ -0.52
Col8a1Q00780 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm22331-201ENSMUST00000158066 136 ntBASIC11.82□□□□□ -0.52
Col8a1Q00780 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm37444-201ENSMUST00000193605 439 ntBASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm19078-201ENSMUST00000206311 727 ntBASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC11.82□□□□□ -0.52
Col8a1Q00780 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Col8a1Q00780 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Gm38037-201ENSMUST00000192600 1624 ntBASIC11.82□□□□□ -0.52
Col8a1Q00780 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC11.82□□□□□ -0.52
Col8a1Q00780 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col8a1Q00780 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC11.81□□□□□ -0.52
Col8a1Q00780 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Col8a1Q00780 AC123645.1-201ENSMUST00000228469 605 ntBASIC11.81□□□□□ -0.52
Col8a1Q00780 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Gm45760-201ENSMUST00000212190 1782 ntBASIC11.81□□□□□ -0.52
Col8a1Q00780 Gm38577-201ENSMUST00000221531 4545 ntBASIC11.81□□□□□ -0.52
Col8a1Q00780 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC11.81□□□□□ -0.52
Col8a1Q00780 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col8a1Q00780 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col8a1Q00780 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms