Protein–RNA interactions for Protein: P86448

Trim43b, Tripartite motif-containing protein 43B, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim43bP86448 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC14.32□□□□□ -0.12
Trim43bP86448 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Trim43bP86448 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.32□□□□□ -0.12
Trim43bP86448 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.32□□□□□ -0.12
Trim43bP86448 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim43bP86448 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim43bP86448 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Trim43bP86448 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Trim43bP86448 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim43bP86448 Gm9824-201ENSMUST00000178707 561 ntBASIC14.31□□□□□ -0.12
Trim43bP86448 Gm10576-201ENSMUST00000191927 825 ntBASIC14.31□□□□□ -0.12
Trim43bP86448 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.31□□□□□ -0.12
Trim43bP86448 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Trim43bP86448 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim43bP86448 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim43bP86448 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.31□□□□□ -0.12
Trim43bP86448 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim43bP86448 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim43bP86448 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trim43bP86448 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC14.3□□□□□ -0.12
Trim43bP86448 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.3□□□□□ -0.12
Trim43bP86448 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14.3□□□□□ -0.12
Trim43bP86448 Auts2-212ENSMUST00000178555 309 ntBASIC14.3□□□□□ -0.12
Trim43bP86448 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC14.3□□□□□ -0.12
Trim43bP86448 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.3□□□□□ -0.12
Trim43bP86448 AC166341.4-201ENSMUST00000220625 123 ntBASIC14.3□□□□□ -0.12
Trim43bP86448 AC139382.1-201ENSMUST00000221402 498 ntBASIC14.3□□□□□ -0.12
Trim43bP86448 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 AC164565.1-201ENSMUST00000217520 1484 ntBASIC14.3□□□□□ -0.12
Trim43bP86448 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Trim43bP86448 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Trim43bP86448 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim43bP86448 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim43bP86448 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Trim43bP86448 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim43bP86448 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms