Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm9176-201ENSMUST00000219955 1120 ntBASIC21.01■□□□□ 0.95
Cux1P53564 AC134335.2-201ENSMUST00000227660 440 ntBASIC21.01■□□□□ 0.95
Cux1P53564 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Cux1P53564 Gm18244-201ENSMUST00000219747 1566 ntBASIC21.01■□□□□ 0.95
Cux1P53564 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cux1P53564 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Cux1P53564 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Cux1P53564 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Cux1P53564 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC21■□□□□ 0.95
Cux1P53564 Gm44364-201ENSMUST00000198368 141 ntBASIC21■□□□□ 0.95
Cux1P53564 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
Cux1P53564 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC21■□□□□ 0.95
Cux1P53564 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC21■□□□□ 0.95
Cux1P53564 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cux1P53564 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC20.99■□□□□ 0.95
Cux1P53564 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC20.99■□□□□ 0.95
Cux1P53564 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC20.99■□□□□ 0.95
Cux1P53564 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
Cux1P53564 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Cux1P53564 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Cux1P53564 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC20.99■□□□□ 0.95
Cux1P53564 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC20.99■□□□□ 0.95
Cux1P53564 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Cux1P53564 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Cux1P53564 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Cux1P53564 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 AC139350.1-201ENSMUST00000227064 1594 ntBASIC20.99■□□□□ 0.95
Cux1P53564 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Gm11637-201ENSMUST00000120601 592 ntBASIC20.99■□□□□ 0.95
Cux1P53564 Mir3102-201ENSMUST00000175555 104 ntBASIC20.99■□□□□ 0.95
Cux1P53564 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC20.99■□□□□ 0.95
Cux1P53564 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cux1P53564 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC20.99■□□□□ 0.95
Cux1P53564 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Cux1P53564 Gm7899-201ENSMUST00000192935 1897 ntBASIC20.98■□□□□ 0.95
Cux1P53564 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 Nupl1-207ENSMUST00000225311 2475 ntBASIC20.98■□□□□ 0.95
Cux1P53564 Gm29199-201ENSMUST00000187766 775 ntBASIC20.98■□□□□ 0.95
Cux1P53564 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 Gm32025-201ENSMUST00000217960 307 ntBASIC20.98■□□□□ 0.95
Cux1P53564 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cux1P53564 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
Cux1P53564 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cux1P53564 Gm43579-201ENSMUST00000202387 1307 ntBASIC20.97■□□□□ 0.95
Cux1P53564 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cux1P53564 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cux1P53564 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cux1P53564 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
Cux1P53564 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Cux1P53564 Gm12620-201ENSMUST00000119791 1986 ntBASIC20.97■□□□□ 0.95
Cux1P53564 Gm12612-201ENSMUST00000140182 1986 ntBASIC20.97■□□□□ 0.95
Cux1P53564 Gm12749-201ENSMUST00000122138 1159 ntBASIC20.97■□□□□ 0.95
Cux1P53564 Gm5637-201ENSMUST00000153890 1119 ntBASIC20.97■□□□□ 0.95
Cux1P53564 Gm17376-201ENSMUST00000166016 84 ntBASIC20.97■□□□□ 0.95
Cux1P53564 Gm7619-201ENSMUST00000210649 1282 ntBASIC20.97■□□□□ 0.95
Cux1P53564 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cux1P53564 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cux1P53564 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC20.97■□□□□ 0.95
Cux1P53564 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Cux1P53564 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Cux1P53564 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cux1P53564 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Cux1P53564 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Cux1P53564 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms