Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Prpf40aQ9R1C7 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Prpf40aQ9R1C7 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Prpf40aQ9R1C7 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Prpf40aQ9R1C7 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Prpf40aQ9R1C7 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Prpf40aQ9R1C7 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Prpf40aQ9R1C7 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Prpf40aQ9R1C7 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Prpf40aQ9R1C7 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Gm27618-201ENSMUST00000183671 60 ntBASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Prpf40aQ9R1C7 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Gm14767-201ENSMUST00000121559 586 ntBASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 AA543401-201ENSMUST00000164248 1269 ntBASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Gm8584-201ENSMUST00000171982 758 ntBASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Gm9109-201ENSMUST00000120254 1405 ntBASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Prpf40aQ9R1C7 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Gm13453-201ENSMUST00000118708 357 ntBASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Gm37277-201ENSMUST00000194052 1111 ntBASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Prpf40aQ9R1C7 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC15.3■□□□□ 0.04
Prpf40aQ9R1C7 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms