Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn11aQ9R053 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn11aQ9R053 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Scn11aQ9R053 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC16.22■□□□□ 0.19
Scn11aQ9R053 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Scn11aQ9R053 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gm9124-201ENSMUST00000191789 1092 ntBASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gm9113-201ENSMUST00000192510 1018 ntBASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gm9131-201ENSMUST00000193557 1089 ntBASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gm9121-201ENSMUST00000193749 1071 ntBASIC16.21■□□□□ 0.19
Scn11aQ9R053 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 AC096628.2-201ENSMUST00000225443 1413 ntBASIC16.21■□□□□ 0.19
Scn11aQ9R053 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Scn11aQ9R053 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Scn11aQ9R053 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
Scn11aQ9R053 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn11aQ9R053 Gm11978-201ENSMUST00000122315 466 ntBASIC16.21■□□□□ 0.18
Scn11aQ9R053 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
Scn11aQ9R053 Gm29649-201ENSMUST00000185649 419 ntBASIC16.21■□□□□ 0.18
Scn11aQ9R053 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Scn11aQ9R053 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC16.21■□□□□ 0.18
Scn11aQ9R053 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Scn11aQ9R053 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Scn11aQ9R053 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Scn11aQ9R053 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Gm45684-201ENSMUST00000210244 1571 ntBASIC16.2■□□□□ 0.18
Scn11aQ9R053 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Tmed9-203ENSMUST00000224741 1450 ntBASIC16.2■□□□□ 0.18
Scn11aQ9R053 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Scn11aQ9R053 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Mir877-201ENSMUST00000104738 85 ntBASIC16.19■□□□□ 0.18
Scn11aQ9R053 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Gm29787-201ENSMUST00000222129 849 ntBASIC16.19■□□□□ 0.18
Scn11aQ9R053 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Mmp14-206ENSMUST00000225641 3238 ntBASIC16.19■□□□□ 0.18
Scn11aQ9R053 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn11aQ9R053 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms