Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Gm10231-201ENSMUST00000181584 441 ntBASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Gm10175-202ENSMUST00000208752 441 ntBASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Gm10252-201ENSMUST00000209541 832 ntBASIC12.44□□□□□ -0.42
Trem1Q9JKE2 AC093926.2-201ENSMUST00000214468 1228 ntBASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Gm10313-201ENSMUST00000095320 1002 ntBASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Trem1Q9JKE2 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Gm10499-201ENSMUST00000174094 934 ntBASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Spcs1-207ENSMUST00000228767 1008 ntBASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Gm7901-201ENSMUST00000120430 1597 ntBASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Trem1Q9JKE2 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Trem1Q9JKE2 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms