Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Gm6283-201ENSMUST00000182369 1000 ntBASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Vps28Q9D1C8 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Gm7488-201ENSMUST00000117148 684 ntBASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Gm6218-201ENSMUST00000219812 628 ntBASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 AC115735.4-201ENSMUST00000227460 1944 ntBASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 AC121801.1-201ENSMUST00000225363 1899 ntBASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Vps28Q9D1C8 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Gm4804-201ENSMUST00000182234 999 ntBASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Hist1h2al-201ENSMUST00000091708 339 ntBASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Vps28Q9D1C8 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms