Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Gm30437-201ENSMUST00000206086 1201 ntBASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Gm18056-201ENSMUST00000207670 568 ntBASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Gm18061-201ENSMUST00000208350 562 ntBASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Gm18063-201ENSMUST00000208529 568 ntBASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Gm18052-201ENSMUST00000208750 559 ntBASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 AC102291.3-201ENSMUST00000226566 405 ntBASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col6a6Q8C6K9 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Gm1335-201ENSMUST00000121653 386 ntBASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Gm43818-201ENSMUST00000200605 466 ntBASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Gm7783-201ENSMUST00000204795 781 ntBASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col6a6Q8C6K9 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Gm12203-201ENSMUST00000118235 598 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Gm12209-201ENSMUST00000120089 596 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Gm38341-201ENSMUST00000195357 515 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Gm45880-201ENSMUST00000213041 853 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Gm5620-201ENSMUST00000077991 1348 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Col6a6Q8C6K9 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms