Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Gm43056-201ENSMUST00000197865 2791 ntBASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Gm3809-201ENSMUST00000180973 1006 ntBASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Gm5354-201ENSMUST00000182417 973 ntBASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Gm4971-201ENSMUST00000205991 1108 ntBASIC15.41■□□□□ 0.06
Trim47Q8C0E3 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Gm18624-201ENSMUST00000220966 658 ntBASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Gm6180-201ENSMUST00000065243 498 ntBASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim47Q8C0E3 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 AC154527.2-201ENSMUST00000225256 1466 ntBASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Mir698-201ENSMUST00000102164 109 ntBASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 AC154687.2-201ENSMUST00000223853 640 ntBASIC15.4■□□□□ 0.06
Trim47Q8C0E3 AC238811.3-201ENSMUST00000225422 709 ntBASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trim47Q8C0E3 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Gm26513-201ENSMUST00000181802 2489 ntBASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Gm28182-201ENSMUST00000188354 2477 ntBASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Gm24420-201ENSMUST00000176676 59 ntBASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Gm43094-201ENSMUST00000196549 921 ntBASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Trim47Q8C0E3 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms