Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim40Q3UWA4 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Trim40Q3UWA4 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim40Q3UWA4 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim40Q3UWA4 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim40Q3UWA4 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim40Q3UWA4 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Trim40Q3UWA4 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Gm28659-201ENSMUST00000188013 759 ntBASIC13.05□□□□□ -0.32
Trim40Q3UWA4 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.05□□□□□ -0.32
Trim40Q3UWA4 AC131690.1-201ENSMUST00000218406 374 ntBASIC13.05□□□□□ -0.32
Trim40Q3UWA4 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Gm7899-201ENSMUST00000192935 1897 ntBASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim40Q3UWA4 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gm5864-201ENSMUST00000202263 970 ntBASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gm10459-201ENSMUST00000202708 1155 ntBASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim40Q3UWA4 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Trim40Q3UWA4 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms